J4_7S1I_005

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7S1I|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S1I_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1064

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7S1I|1|I|C|268
7S1I|1|I|C|269
*
7S1I|1|I|G|370
7S1I|1|I|A|371
7S1I|1|I|G|372
7S1I|1|I|U|373
7S1I|1|I|A|374
7S1I|1|I|G|375
*
7S1I|1|I|U|399
7S1I|1|I|G|400
7S1I|1|I|A|401
7S1I|1|I|A|402
7S1I|1|I|U|403
7S1I|1|I|A|404
7S1I|1|I|U|405
7S1I|1|I|G|406
*
7S1I|1|I|C|421
7S1I|1|I|A|422
7S1I|1|I|A|423
7S1I|1|I|G|424

Current chains

Chain I

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L9

Chain f

50S ribosomal protein L28