J4_7S1J_002

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7S1J|1|C|C|183, 7S1J|1|C|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S1J_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.109

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7S1J|1|C|G|142
7S1J|1|C|A|143
7S1J|1|C|G|144
*
7S1J|1|C|C|178
7S1J|1|C|A|179
7S1J|1|C|U|180
7S1J|1|C|A|181
7S1J|1|C|A|182
7S1J|1|C|C|183
7S1J|1|C|G|184
*
7S1J|1|C|C|193
7S1J|1|C|C|194
7S1J|1|C|A|195
7S1J|1|C|A|196
7S1J|1|C|A|197
7S1J|1|C|G|198
*
7S1J|1|C|U|219
7S1J|1|C|G|220
7S1J|1|C|C|221

Current chains

Chain C

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S20