J4_7S1J_009

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7S1J|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S1J_009 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0642

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7S1J|1|I|U|1313
7S1J|1|I|C|1314
*
7S1J|1|I|G|1338
7S1J|1|I|G|1339
7S1J|1|I|U|1340
7S1J|1|I|G|1341
7S1J|1|I|A|1342
7S1J|1|I|G|1343
*
7S1J|1|I|C|1404
7S1J|1|I|U|1405
*
7S1J|1|I|A|1597
7S1J|1|I|A|1598
7S1J|1|I|U|1599
7S1J|1|I|C|1600
7S1J|1|I|G|1601
7S1J|1|I|U|1602
7S1J|1|I|A|1603

Current chains

Chain I

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L23