J4_7S1J_014

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S1J_014 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.058

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7S1J|1|I|G|2643
7S1J|1|I|G|2644
7S1J|1|I|G|2645
7S1J|1|I|C|2646
*
7S1J|1|I|G|2674
7S1J|1|I|A|2675
7S1J|1|I|C|2676
*
7S1J|1|I|G|2731
7S1J|1|I|G|2732
7S1J|1|I|A|2733
7S1J|1|I|A|2734
7S1J|1|I|G|2735
*
7S1J|1|I|U|2769
7S1J|1|I|G|2770
7S1J|1|I|C|2771

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain R

50S ribosomal protein L13

Chain S

50S ribosomal protein L14