3D structure

PDB id
7S1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
7S1K|1|C|C|183, 7S1K|1|C|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7S1K_003 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.1258
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7S1K|1|C|G|142
7S1K|1|C|A|143
7S1K|1|C|G|144
*
7S1K|1|C|C|178
7S1K|1|C|A|179
7S1K|1|C|U|180
7S1K|1|C|A|181
7S1K|1|C|A|182
7S1K|1|C|C|183
7S1K|1|C|G|184
*
7S1K|1|C|C|193
7S1K|1|C|C|194
7S1K|1|C|A|195
7S1K|1|C|A|196
7S1K|1|C|A|197
7S1K|1|C|G|198
*
7S1K|1|C|U|219
7S1K|1|C|G|220
7S1K|1|C|C|221

Current chains

Chain C
16S rRNA

Nearby chains

Chain 2
30S ribosomal protein S20

Coloring options:


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