J4_7S9U_005

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

7S9U|1|A|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S9U_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.126

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7S9U|1|A|G|1349
7S9U|1|A|U|1350
7S9U|1|A|U|1351
7S9U|1|A|U|1352
7S9U|1|A|C|1353
*
7S9U|1|A|G|1377
7S9U|1|A|G|1378
7S9U|1|A|U|1379
7S9U|1|A|U|1380
7S9U|1|A|A|1381
7S9U|1|A|G|1382
*
7S9U|1|A|C|1443
7S9U|1|A|C|1444
*
7S9U|1|A|G|1642
7S9U|1|A|C|1643
7S9U|1|A|C|1644
7S9U|1|A|C|1645
7S9U|1|A|G|1646
7S9U|1|A|U|1647
7S9U|1|A|A|1648
7S9U|1|A|C|1649

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34