J4_7S9U_008

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7S9U_008 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1938

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7S9U|1|A|G|2672
7S9U|1|A|A|2673
7S9U|1|A|G|2674
7S9U|1|A|C|2675
*
7S9U|1|A|G|2703
7S9U|1|A|A|2704
7S9U|1|A|C|2705
*
7S9U|1|A|G|2760
7S9U|1|A|G|2761
7S9U|1|A|A|2762
7S9U|1|A|C|2763
7S9U|1|A|G|2764
*
7S9U|1|A|C|2798
7S9U|1|A|C|2799
7S9U|1|A|C|2800

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14