J4_7SA4_001

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7SA4|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SA4_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1109

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7SA4|1|1|C|268
7SA4|1|1|C|269
*
7SA4|1|1|G|370
7SA4|1|1|A|371
7SA4|1|1|G|372
7SA4|1|1|U|373
7SA4|1|1|A|374
7SA4|1|1|G|375
*
7SA4|1|1|U|399
7SA4|1|1|G|400
7SA4|1|1|A|401
7SA4|1|1|A|402
7SA4|1|1|U|403
7SA4|1|1|A|404
7SA4|1|1|U|405
7SA4|1|1|G|406
*
7SA4|1|1|C|421
7SA4|1|1|A|422
7SA4|1|1|A|423
7SA4|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28