J4_7SA4_012

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7SA4|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SA4_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.131

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7SA4|1|2|G|115
7SA4|1|2|A|116
7SA4|1|2|G|117
7SA4|1|2|U|118
7SA4|1|2|A|119
7SA4|1|2|A|120
7SA4|1|2|U|121
7SA4|1|2|G|122
*
7SA4|1|2|U|239
7SA4|1|2|G|240
*
7SA4|1|2|C|286
7SA4|1|2|U|287
7SA4|1|2|A|288
7SA4|1|2|G|289
*
7SA4|1|2|C|311
7SA4|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17