J4_7SAE_010

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SAE_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.2018

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7SAE|1|A|G|2672
7SAE|1|A|A|2673
7SAE|1|A|G|2674
7SAE|1|A|C|2675
*
7SAE|1|A|G|2703
7SAE|1|A|A|2704
7SAE|1|A|C|2705
*
7SAE|1|A|G|2760
7SAE|1|A|G|2761
7SAE|1|A|A|2762
7SAE|1|A|C|2763
7SAE|1|A|G|2764
*
7SAE|1|A|C|2798
7SAE|1|A|C|2799
7SAE|1|A|C|2800

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14