J4_7SS9_005

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7SS9|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SS9_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1485

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7SS9|1|1|U|1313
7SS9|1|1|C|1314
*
7SS9|1|1|G|1338
7SS9|1|1|G|1339
7SS9|1|1|U|1340
7SS9|1|1|G|1341
7SS9|1|1|A|1342
7SS9|1|1|G|1343
*
7SS9|1|1|C|1404
7SS9|1|1|U|1405
*
7SS9|1|1|A|1597
7SS9|1|1|A|1598
7SS9|1|1|U|1599
7SS9|1|1|C|1600
7SS9|1|1|G|1601
7SS9|1|1|U|1602
7SS9|1|1|A|1603

Current chains

Chain 1

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23