J4_7SS9_016

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7SS9|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SS9_016 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2215

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7SS9|1|1|C|268
7SS9|1|1|C|269
*
7SS9|1|1|G|370
7SS9|1|1|A|371
7SS9|1|1|G|372
7SS9|1|1|U|373
7SS9|1|1|A|374
7SS9|1|1|G|375
*
7SS9|1|1|U|399
7SS9|1|1|G|400
7SS9|1|1|A|401
7SS9|1|1|A|402
7SS9|1|1|U|403
7SS9|1|1|A|404
7SS9|1|1|U|405
7SS9|1|1|G|406
*
7SS9|1|1|C|421
7SS9|1|1|A|422
7SS9|1|1|A|423
7SS9|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28