J4_7SSD_001

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7SSD|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SSD_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1468

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7SSD|1|1|C|268
7SSD|1|1|C|269
*
7SSD|1|1|G|370
7SSD|1|1|A|371
7SSD|1|1|G|372
7SSD|1|1|U|373
7SSD|1|1|A|374
7SSD|1|1|G|375
*
7SSD|1|1|U|399
7SSD|1|1|G|400
7SSD|1|1|A|401
7SSD|1|1|A|402
7SSD|1|1|U|403
7SSD|1|1|A|404
7SSD|1|1|U|405
7SSD|1|1|G|406
*
7SSD|1|1|C|421
7SSD|1|1|A|422
7SSD|1|1|A|423
7SSD|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28