J4_7SSL_001

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7SSL|1|1|A|404, 7SSL|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SSL_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2123

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7SSL|1|1|C|268
7SSL|1|1|C|269
*
7SSL|1|1|G|370
7SSL|1|1|A|371
7SSL|1|1|G|372
7SSL|1|1|U|373
7SSL|1|1|A|374
7SSL|1|1|G|375
*
7SSL|1|1|U|399
7SSL|1|1|G|400
7SSL|1|1|A|401
7SSL|1|1|A|402
7SSL|1|1|U|403
7SSL|1|1|A|404
7SSL|1|1|U|405
7SSL|1|1|G|406
*
7SSL|1|1|C|421
7SSL|1|1|A|422
7SSL|1|1|A|423
7SSL|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28