J4_7SSL_007

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SSL_007 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.118

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7SSL|1|1|A|1772
7SSL|1|1|A|1773
7SSL|1|1|C|1774
7SSL|1|1|U|1775
7SSL|1|1|G|1776
*
7SSL|1|1|C|1788
7SSL|1|1|A|1789
7SSL|1|1|C|1790
7SSL|1|1|A|1791
7SSL|1|1|G|1792
*
7SSL|1|1|U|1827
7SSL|1|1|G|1828
7SSL|1|1|A|1829
7SSL|1|1|C|1830
*
7SSL|1|1|G|1975
7SSL|1|1|U|1976
7SSL|1|1|A|1977
7SSL|1|1|A|1978
7SSL|1|1|U|1979

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2