J4_7SSN_001

3D structure

PDB id

7SSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7SSN|1|1|A|404, 7SSN|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SSN_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1671

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7SSN|1|1|C|268
7SSN|1|1|C|269
*
7SSN|1|1|G|370
7SSN|1|1|A|371
7SSN|1|1|G|372
7SSN|1|1|U|373
7SSN|1|1|A|374
7SSN|1|1|G|375
*
7SSN|1|1|U|399
7SSN|1|1|G|400
7SSN|1|1|A|401
7SSN|1|1|A|402
7SSN|1|1|U|403
7SSN|1|1|A|404
7SSN|1|1|U|405
7SSN|1|1|G|406
*
7SSN|1|1|C|421
7SSN|1|1|A|422
7SSN|1|1|A|423
7SSN|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain x

50S ribosomal protein L28