3D structure

PDB id
7SSN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
7SSN|1|3|C|183, 7SSN|1|3|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7SSN_018 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.1613
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7SSN|1|3|G|142
7SSN|1|3|A|143
7SSN|1|3|G|144
*
7SSN|1|3|C|178
7SSN|1|3|A|179
7SSN|1|3|U|180
7SSN|1|3|A|181
7SSN|1|3|A|182
7SSN|1|3|C|183
7SSN|1|3|G|184
*
7SSN|1|3|C|193
7SSN|1|3|C|194
7SSN|1|3|A|195
7SSN|1|3|A|196
7SSN|1|3|A|197
7SSN|1|3|G|198
*
7SSN|1|3|U|219
7SSN|1|3|G|220
7SSN|1|3|C|221

Current chains

Chain 3
16S rRNA

Nearby chains

Chain Y
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.117 s