J4_7SSO_001

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7SSO|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SSO_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1186

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7SSO|1|1|C|268
7SSO|1|1|C|269
*
7SSO|1|1|G|370
7SSO|1|1|A|371
7SSO|1|1|G|372
7SSO|1|1|U|373
7SSO|1|1|A|374
7SSO|1|1|G|375
*
7SSO|1|1|U|399
7SSO|1|1|G|400
7SSO|1|1|A|401
7SSO|1|1|A|402
7SSO|1|1|U|403
7SSO|1|1|A|404
7SSO|1|1|U|405
7SSO|1|1|G|406
*
7SSO|1|1|C|421
7SSO|1|1|A|422
7SSO|1|1|A|423
7SSO|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28