J4_7SSO_005

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7SSO|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SSO_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.096

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7SSO|1|1|U|1313
7SSO|1|1|C|1314
*
7SSO|1|1|G|1338
7SSO|1|1|G|1339
7SSO|1|1|U|1340
7SSO|1|1|G|1341
7SSO|1|1|A|1342
7SSO|1|1|G|1343
*
7SSO|1|1|C|1404
7SSO|1|1|U|1405
*
7SSO|1|1|A|1597
7SSO|1|1|A|1598
7SSO|1|1|U|1599
7SSO|1|1|C|1600
7SSO|1|1|G|1601
7SSO|1|1|U|1602
7SSO|1|1|A|1603

Current chains

Chain 1

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23