J4_7SSW_001

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7SSW|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SSW_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1902

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7SSW|1|1|C|268
7SSW|1|1|C|269
*
7SSW|1|1|G|370
7SSW|1|1|A|371
7SSW|1|1|G|372
7SSW|1|1|U|373
7SSW|1|1|A|374
7SSW|1|1|G|375
*
7SSW|1|1|U|399
7SSW|1|1|G|400
7SSW|1|1|A|401
7SSW|1|1|A|402
7SSW|1|1|U|403
7SSW|1|1|A|404
7SSW|1|1|U|405
7SSW|1|1|G|406
*
7SSW|1|1|C|421
7SSW|1|1|A|422
7SSW|1|1|A|423
7SSW|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28