J4_7SSW_015
3D structure
- PDB id
- 7SSW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late translocation intermediate with EF-G dissociated (Structure VI)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 7SSW|1|6|U|8
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7SSW_015 not in the Motif Atlas
- Homologous match to J4_1QF6_001
- Geometric discrepancy: 0.3998
- The information below is about J4_1QF6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_51436.1
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7SSW|1|6|G|7
7SSW|1|6|U|8
7SSW|1|6|G|9
7SSW|1|6|G|10
*
7SSW|1|6|C|25
7SSW|1|6|G|26
7SSW|1|6|U|27
7SSW|1|6|C|28
*
7SSW|1|6|G|42
7SSW|1|6|A|43
7SSW|1|6|A|44
7SSW|1|6|G|45
7SSW|1|6|G|46
7SSW|1|6|U|47
7SSW|1|6|C|48
7SSW|1|6|G|49
*
7SSW|1|6|C|65
7SSW|1|6|C|66
Current chains
- Chain 6
- tRNA fMet
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
- Chain R
- 30S ribosomal protein S13
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