J4_7ST2_001

3D structure

PDB id

7ST2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7ST2|1|1|A|404, 7ST2|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ST2_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1505

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ST2|1|1|C|268
7ST2|1|1|C|269
*
7ST2|1|1|G|370
7ST2|1|1|A|371
7ST2|1|1|G|372
7ST2|1|1|U|373
7ST2|1|1|A|374
7ST2|1|1|G|375
*
7ST2|1|1|U|399
7ST2|1|1|G|400
7ST2|1|1|A|401
7ST2|1|1|A|402
7ST2|1|1|U|403
7ST2|1|1|A|404
7ST2|1|1|U|405
7ST2|1|1|G|406
*
7ST2|1|1|C|421
7ST2|1|1|A|422
7ST2|1|1|A|423
7ST2|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28