3D structure

PDB id
7ST2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
7ST2|1|3|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ST2_011 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2448
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7ST2|1|3|G|115
7ST2|1|3|A|116
7ST2|1|3|G|117
7ST2|1|3|U|118
7ST2|1|3|A|119
7ST2|1|3|A|120
7ST2|1|3|U|121
7ST2|1|3|G|122
*
7ST2|1|3|U|239
7ST2|1|3|G|240
*
7ST2|1|3|C|286
7ST2|1|3|U|287
7ST2|1|3|A|288
7ST2|1|3|G|289
*
7ST2|1|3|C|311
7ST2|1|3|C|312

Current chains

Chain 3
16S rRNA

Nearby chains

Chain U
30S ribosomal protein S16
Chain V
30S ribosomal protein S17

Coloring options:


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