J4_7ST6_001

3D structure

PDB id

7ST6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation, non-rotated 70S ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7ST6|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ST6_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1541

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ST6|1|1|C|268
7ST6|1|1|C|269
*
7ST6|1|1|G|370
7ST6|1|1|A|371
7ST6|1|1|G|372
7ST6|1|1|U|373
7ST6|1|1|A|374
7ST6|1|1|G|375
*
7ST6|1|1|U|399
7ST6|1|1|G|400
7ST6|1|1|A|401
7ST6|1|1|A|402
7ST6|1|1|U|403
7ST6|1|1|A|404
7ST6|1|1|U|405
7ST6|1|1|G|406
*
7ST6|1|1|C|421
7ST6|1|1|A|422
7ST6|1|1|A|423
7ST6|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28