J4_7ST7_001

3D structure

PDB id

7ST7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7ST7|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ST7_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1573

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ST7|1|1|C|268
7ST7|1|1|C|269
*
7ST7|1|1|G|370
7ST7|1|1|A|371
7ST7|1|1|G|372
7ST7|1|1|U|373
7ST7|1|1|A|374
7ST7|1|1|G|375
*
7ST7|1|1|U|399
7ST7|1|1|G|400
7ST7|1|1|A|401
7ST7|1|1|A|402
7ST7|1|1|U|403
7ST7|1|1|A|404
7ST7|1|1|U|405
7ST7|1|1|G|406
*
7ST7|1|1|C|421
7ST7|1|1|A|422
7ST7|1|1|A|423
7ST7|1|1|G|424

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28