3D structure

PDB id
7ST7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGC*GAC*GGAAG*UGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ST7_010 not in the Motif Atlas
Homologous match to J4_5J7L_028
Geometric discrepancy: 0.099
The information below is about J4_5J7L_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

7ST7|1|1|G|2643
7ST7|1|1|G|2644
7ST7|1|1|G|2645
7ST7|1|1|C|2646
*
7ST7|1|1|G|2674
7ST7|1|1|A|2675
7ST7|1|1|C|2676
*
7ST7|1|1|G|2731
7ST7|1|1|G|2732
7ST7|1|1|A|2733
7ST7|1|1|A|2734
7ST7|1|1|G|2735
*
7ST7|1|1|U|2769
7ST7|1|1|G|2770
7ST7|1|1|C|2771

Current chains

Chain 1
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13
Chain k
50S ribosomal protein L14

Coloring options:


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