J4_7SUK_001

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CAUUAAAUC*GCCCUAUCAA*UUUCAACGGGUAACGG*CCGG

Length

39 nucleotides

Bulged bases

7SUK|1|8|U|313, 7SUK|1|8|C|351, 7SUK|1|8|A|359, 7SUK|1|8|C|361

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SUK|1|8|C|99
7SUK|1|8|A|100
7SUK|1|8|U|101
7SUK|1|8|U|102
7SUK|1|8|A|103
7SUK|1|8|A|104
7SUK|1|8|A|105
7SUK|1|8|U|106
7SUK|1|8|C|107
*
7SUK|1|8|G|307
7SUK|1|8|C|308
7SUK|1|8|C|309
7SUK|1|8|C|310
7SUK|1|8|U|311
7SUK|1|8|A|312
7SUK|1|8|U|313
7SUK|1|8|C|314
7SUK|1|8|A|315
7SUK|1|8|A|316
*
7SUK|1|8|U|348
7SUK|1|8|U|349
7SUK|1|8|U|350
7SUK|1|8|C|351
7SUK|1|8|A|352
7SUK|1|8|A|353
7SUK|1|8|C|354
7SUK|1|8|G|355
7SUK|1|8|G|356
7SUK|1|8|G|357
7SUK|1|8|U|358
7SUK|1|8|A|359
7SUK|1|8|A|360
7SUK|1|8|C|361
7SUK|1|8|G|362
7SUK|1|8|G|363
*
7SUK|1|8|C|381
7SUK|1|8|C|382
7SUK|1|8|G|383
7SUK|1|8|G|384

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain 5

Protein BFR2

Chain 6

U3 small nucleolar ribonucleoprotein protein LCP5

Chain L8

40S ribosomal protein S8-A

Chain LD

40S ribosomal protein S11-A