J4_7SYJ_006

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUUGU*AAAUAACA*UGGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAUU*AAUAG

Length

58 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYJ|1|2|C|30
7SYJ|1|2|U|31
7SYJ|1|2|U|32
7SYJ|1|2|G|33
7SYJ|1|2|U|34
*
7SYJ|1|2|A|521
7SYJ|1|2|A|522
7SYJ|1|2|A|523
7SYJ|1|2|U|524
7SYJ|1|2|A|525
7SYJ|1|2|A|526
7SYJ|1|2|C|527
7SYJ|1|2|A|528
*
7SYJ|1|2|U|557
7SYJ|1|2|G|558
7SYJ|1|2|G|559
7SYJ|1|2|A|560
7SYJ|1|2|A|561
7SYJ|1|2|U|562
7SYJ|1|2|G|563
7SYJ|1|2|A|564
7SYJ|1|2|G|565
7SYJ|1|2|U|566
7SYJ|1|2|C|567
7SYJ|1|2|C|568
7SYJ|1|2|A|569
7SYJ|1|2|C|570
7SYJ|1|2|U|571
7SYJ|1|2|U|572
7SYJ|1|2|U|573
7SYJ|1|2|A|574
7SYJ|1|2|A|575
7SYJ|1|2|A|576
7SYJ|1|2|U|577
7SYJ|1|2|C|578
7SYJ|1|2|C|579
7SYJ|1|2|U|580
7SYJ|1|2|U|581
7SYJ|1|2|U|582
7SYJ|1|2|A|583
7SYJ|1|2|A|584
7SYJ|1|2|C|585
7SYJ|1|2|G|586
7SYJ|1|2|A|587
7SYJ|1|2|G|588
7SYJ|1|2|G|589
7SYJ|1|2|A|590
7SYJ|1|2|U|591
7SYJ|1|2|C|592
7SYJ|1|2|C|593
7SYJ|1|2|A|594
7SYJ|1|2|U|595
7SYJ|1|2|U|596
*
7SYJ|1|2|A|640
7SYJ|1|2|A|641
7SYJ|1|2|U|642
7SYJ|1|2|A|643
7SYJ|1|2|G|644

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12

Chain Z

40S ribosomal protein S24

Chain f

eS30