J4_7SYQ_002
3D structure
- PDB id
- 7SYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7SYQ|1|2|A|672, 7SYQ|1|2|A|1083, 7SYQ|1|2|C|1085, 7SYQ|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7SYQ_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1399
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7SYQ|1|2|A|671
7SYQ|1|2|A|672
7SYQ|1|2|G|673
*
7SYQ|1|2|C|1032
7SYQ|1|2|G|1033
7SYQ|1|2|A|1034
7SYQ|1|2|A|1035
7SYQ|1|2|A|1036
7SYQ|1|2|G|1037
*
7SYQ|1|2|C|1078
7SYQ|1|2|C|1079
7SYQ|1|2|A|1080
7SYQ|1|2|U|1081
7SYQ|1|2|A|1082
7SYQ|1|2|A|1083
7SYQ|1|2|A|1084
7SYQ|1|2|C|1085
7SYQ|1|2|G|1086
7SYQ|1|2|A|1087
7SYQ|1|2|U|1088
7SYQ|1|2|G|1089
*
7SYQ|1|2|U|1160
7SYQ|1|2|U|1161
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain M
- uS17
- Chain O
- uS15
- Chain P
- uS11
- Chain X
- uS8
- Chain Y
- uS12
- Chain b
- eS26
- Chain n
- eL41
Coloring options: