J4_7SYV_001

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

7SYV|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SYV_001 not in the Motif Atlas

Homologous match to J4_8C3A_021

Geometric discrepancy: 0.1707

The information below is about J4_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78231.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7SYV|1|2|C|98
7SYV|1|2|A|99
7SYV|1|2|U|100
7SYV|1|2|U|101
7SYV|1|2|A|102
7SYV|1|2|A|103
7SYV|1|2|A|104
7SYV|1|2|U|105
7SYV|1|2|C|106
*
7SYV|1|2|G|355
7SYV|1|2|C|356
7SYV|1|2|C|357
*
7SYV|1|2|G|405
7SYV|1|2|U|406
7SYV|1|2|G|407
7SYV|1|2|A|408
7SYV|1|2|C|409
*
7SYV|1|2|G|431
7SYV|1|2|G|432

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

eS8

Chain M

uS17

Chain Y

uS12