J4_7SYV_004

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CUG*UG*CC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYV|1|z|G|133
7SYV|1|z|A|134
7SYV|1|z|G|135
*
7SYV|1|z|C|289
7SYV|1|z|U|290
7SYV|1|z|G|291
*
7SYV|1|z|U|302
7SYV|1|z|G|303
*
7SYV|1|z|C|314
7SYV|1|z|C|315

Current chains

Chain z

HCV IRES

Nearby chains

Chain C

eS1