J4_7TM3_004

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7TM3|1|K|A|2366, 7TM3|1|K|U|2369, 7TM3|1|K|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|C|2365
7TM3|1|K|A|2366
7TM3|1|K|A|2367
7TM3|1|K|A|2368
7TM3|1|K|U|2369
7TM3|1|K|A|2370
7TM3|1|K|U|2371
*
7TM3|1|K|A|2389
7TM3|1|K|G|2390
7TM3|1|K|G|2391
*
7TM3|1|K|C|2824
7TM3|1|K|A|2825
7TM3|1|K|U|2826
7TM3|1|K|G|2827
7TM3|1|K|U|2828
7TM3|1|K|U|2829
*
7TM3|1|K|A|3856
7TM3|1|K|G|3857

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

Ribosomal protein L19

Chain d

eL31