J4_7TM3_007

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TM3_007 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0906

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

7TM3|1|K|G|3634
7TM3|1|K|A|3635
7TM3|1|K|C|3636
7TM3|1|K|U|3637
7TM3|1|K|G|3638
*
7TM3|1|K|C|3650
7TM3|1|K|A|3651
7TM3|1|K|A|3652
7TM3|1|K|A|3653
7TM3|1|K|G|3654
*
7TM3|1|K|U|3690
7TM3|1|K|G|3691
7TM3|1|K|A|3692
7TM3|1|K|U|3693
7TM3|1|K|U|3694
*
7TM3|1|K|A|3821
7TM3|1|K|U|3822
7TM3|1|K|G|3823
7TM3|1|K|A|3824
7TM3|1|K|A|3825
7TM3|1|K|C|3826

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain n

eL41

Chain p

eL43