J4_7TOO_001
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 7TOO|1|A25S|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7TOO_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.114
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOO|1|A25S|U|112
7TOO|1|A25S|C|113
*
7TOO|1|A25S|G|267
7TOO|1|A25S|A|268
7TOO|1|A25S|G|269
7TOO|1|A25S|U|270
7TOO|1|A25S|C|271
7TOO|1|A25S|G|272
*
7TOO|1|A25S|C|293
7TOO|1|A25S|U|294
7TOO|1|A25S|A|295
7TOO|1|A25S|A|296
7TOO|1|A25S|G|297
7TOO|1|A25S|U|298
7TOO|1|A25S|G|299
*
7TOO|1|A25S|U|316
7TOO|1|A25S|A|317
7TOO|1|A25S|A|318
7TOO|1|A25S|A|319
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL13
- 60S ribosomal protein L13-A
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL35
- 60S ribosomal protein L35-A
- Chain AL36
- 60S ribosomal protein L36-A
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