J4_7TOO_006

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOO_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0788

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

7TOO|1|A25S|G|2130
7TOO|1|A25S|A|2131
7TOO|1|A25S|C|2132
7TOO|1|A25S|U|2133
7TOO|1|A25S|G|2134
*
7TOO|1|A25S|C|2146
7TOO|1|A25S|A|2147
7TOO|1|A25S|U|2148
7TOO|1|A25S|A|2149
7TOO|1|A25S|G|2150
*
7TOO|1|A25S|U|2186
7TOO|1|A25S|G|2187
7TOO|1|A25S|A|2188
7TOO|1|A25S|U|2189
7TOO|1|A25S|U|2190
*
7TOO|1|A25S|A|2317
7TOO|1|A25S|U|2318
7TOO|1|A25S|U|2319
7TOO|1|A25S|A|2320
7TOO|1|A25S|A|2321
7TOO|1|A25S|C|2322

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL41

60S ribosomal protein L41-A

Chain AL43

60S ribosomal protein L43-A