J4_7TOO_011

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7TOO|1|A25S|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOO_011 not in the Motif Atlas

Homologous match to J4_8CRE_007

Geometric discrepancy: 0.2023

The information below is about J4_8CRE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_63658.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F

Number of instances in this motif group

1

Unit IDs

7TOO|1|A25S|C|2192
7TOO|1|A25S|U|2193
7TOO|1|A25S|G|2194
*
7TOO|1|A25S|C|2248
7TOO|1|A25S|G|2249
*
7TOO|1|A25S|C|2267
7TOO|1|A25S|U|2268
7TOO|1|A25S|U|2269
7TOO|1|A25S|A|2270
7TOO|1|A25S|A|2271
7TOO|1|A25S|G|2272
7TOO|1|A25S|G|2273
7TOO|1|A25S|U|2274
7TOO|1|A25S|A|2275
7TOO|1|A25S|G|2276
*
7TOO|1|A25S|U|2310
7TOO|1|A25S|G|2311
7TOO|1|A25S|A|2312
7TOO|1|A25S|A|2313
7TOO|1|A25S|U|2314
7TOO|1|A25S|G|2315

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL41

60S ribosomal protein L41-A