3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
7TOP|1|A25S|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7TOP_004 not in the Motif Atlas
Homologous match to J4_8P9A_015
Geometric discrepancy: 0.0624
The information below is about J4_8P9A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7TOP|1|A25S|G|1492
7TOP|1|A25S|G|1493
7TOP|1|A25S|U|1494
7TOP|1|A25S|U|1495
7TOP|1|A25S|C|1496
*
7TOP|1|A25S|G|1520
7TOP|1|A25S|G|1521
7TOP|1|A25S|U|1522
7TOP|1|A25S|U|1523
7TOP|1|A25S|A|1524
7TOP|1|A25S|G|1525
*
7TOP|1|A25S|C|1614
7TOP|1|A25S|C|1615
*
7TOP|1|A25S|G|1829
7TOP|1|A25S|G|1830
7TOP|1|A25S|U|1831
7TOP|1|A25S|C|1832
7TOP|1|A25S|G|1833
7TOP|1|A25S|U|1834
7TOP|1|A25S|A|1835
7TOP|1|A25S|C|1836

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain A58S
5.8S ribosomal RNA; 5.8S rRNA
Chain AL19
60S ribosomal protein L19-A
Chain AL25
60S ribosomal protein L25
Chain AL34
60S ribosomal protein L34-A
Chain AL37
60S ribosomal protein L37-A
Chain AL38
RPL38 isoform 1
Chain AL39
60S ribosomal protein L39

Coloring options:


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