J4_7TOP_006

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOP_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0712

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

7TOP|1|A25S|G|2130
7TOP|1|A25S|A|2131
7TOP|1|A25S|C|2132
7TOP|1|A25S|U|2133
7TOP|1|A25S|G|2134
*
7TOP|1|A25S|C|2146
7TOP|1|A25S|A|2147
7TOP|1|A25S|U|2148
7TOP|1|A25S|A|2149
7TOP|1|A25S|G|2150
*
7TOP|1|A25S|U|2186
7TOP|1|A25S|G|2187
7TOP|1|A25S|A|2188
7TOP|1|A25S|U|2189
7TOP|1|A25S|U|2190
*
7TOP|1|A25S|A|2317
7TOP|1|A25S|U|2318
7TOP|1|A25S|U|2319
7TOP|1|A25S|A|2320
7TOP|1|A25S|A|2321
7TOP|1|A25S|C|2322

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL41

60S ribosomal protein L41-A

Chain AL43

60S ribosomal protein L43-A