J4_7TOP_009

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOP_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0883

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7TOP|1|A25S|U|3010
7TOP|1|A25S|A|3011
7TOP|1|A25S|A|3012
*
7TOP|1|A25S|U|3042
7TOP|1|A25S|C|3043
*
7TOP|1|A25S|G|3098
7TOP|1|A25S|C|3099
7TOP|1|A25S|U|3100
*
7TOP|1|A25S|A|3134
7TOP|1|A25S|U|3135
7TOP|1|A25S|G|3136

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL16

60S ribosomal protein L16-A

Chain AL23

60S ribosomal protein L23-A