J4_7TOQ_004

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

7TOQ|1|A25S|C|216, 7TOQ|1|A25S|C|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOQ|1|A25S|C|196
7TOQ|1|A25S|A|197
7TOQ|1|A25S|A|198
7TOQ|1|A25S|G|199
*
7TOQ|1|A25S|C|215
7TOQ|1|A25S|C|216
7TOQ|1|A25S|C|217
7TOQ|1|A25S|A|218
7TOQ|1|A25S|G|219
7TOQ|1|A25S|C|220
7TOQ|1|A25S|C|221
7TOQ|1|A25S|C|222
*
7TOQ|1|A25S|G|226
7TOQ|1|A25S|A|227
7TOQ|1|A25S|C|228
*
7TOQ|1|A25S|G|240
7TOQ|1|A25S|G|241
7TOQ|1|A25S|U|242
7TOQ|1|A25S|A|243
7TOQ|1|A25S|G|244

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL26

60S ribosomal protein L26