J4_7TOQ_005
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GAGGGAG*UGCGCCGCGCUCU*GAGCGCACGGGG
- Length
- 34 nucleotides
- Bulged bases
- 7TOQ|1|A25S|G|959, 7TOQ|1|A25S|C|972, 7TOQ|1|A25S|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOQ|1|A25S|C|712
7TOQ|1|A25S|C|713
*
7TOQ|1|A25S|G|955
7TOQ|1|A25S|A|956
7TOQ|1|A25S|G|957
7TOQ|1|A25S|G|958
7TOQ|1|A25S|G|959
7TOQ|1|A25S|A|960
7TOQ|1|A25S|G|961
*
7TOQ|1|A25S|U|971
7TOQ|1|A25S|G|971|||A
7TOQ|1|A25S|C|972
7TOQ|1|A25S|G|973
7TOQ|1|A25S|C|974
7TOQ|1|A25S|C|975
7TOQ|1|A25S|G|976
7TOQ|1|A25S|C|977
7TOQ|1|A25S|G|978
7TOQ|1|A25S|C|979
7TOQ|1|A25S|U|980
7TOQ|1|A25S|C|981
7TOQ|1|A25S|U|982
*
7TOQ|1|A25S|G|1273
7TOQ|1|A25S|A|1274
7TOQ|1|A25S|G|1275
7TOQ|1|A25S|C|1276
7TOQ|1|A25S|G|1277
7TOQ|1|A25S|C|1278
7TOQ|1|A25S|A|1279
7TOQ|1|A25S|C|1280
7TOQ|1|A25S|G|1281
7TOQ|1|A25S|G|1282
7TOQ|1|A25S|G|1283
7TOQ|1|A25S|G|1284
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL06
- 60S ribosomal protein L6
- Chain AL07
- uL30
- Chain AL29
- eL29
- Chain AL32
- 60S ribosomal protein L32
Coloring options: