J4_7TOQ_008

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGAUG*CAGUG*CGACC*GAGGGUGUAAAUCUC

Length

32 nucleotides

Bulged bases

7TOQ|1|A25S|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOQ|1|A25S|G|2549
7TOQ|1|A25S|G|2550
7TOQ|1|A25S|A|2551
7TOQ|1|A25S|G|2552
7TOQ|1|A25S|A|2553
7TOQ|1|A25S|U|2554
7TOQ|1|A25S|G|2555
*
7TOQ|1|A25S|C|2572
7TOQ|1|A25S|A|2573
7TOQ|1|A25S|G|2574
7TOQ|1|A25S|U|2575
7TOQ|1|A25S|G|2576
*
7TOQ|1|A25S|C|2585
7TOQ|1|A25S|G|2586
7TOQ|1|A25S|A|2587
7TOQ|1|A25S|C|2588
7TOQ|1|A25S|C|2589
*
7TOQ|1|A25S|G|2756
7TOQ|1|A25S|A|2757
7TOQ|1|A25S|G|2758
7TOQ|1|A25S|G|2759
7TOQ|1|A25S|G|2760
7TOQ|1|A25S|U|2761
7TOQ|1|A25S|G|2762
7TOQ|1|A25S|U|2763
7TOQ|1|A25S|A|2764
7TOQ|1|A25S|A|2765
7TOQ|1|A25S|A|2766
7TOQ|1|A25S|U|2767
7TOQ|1|A25S|C|2768
7TOQ|1|A25S|U|2769
7TOQ|1|A25S|C|2770

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL27

60S ribosomal protein L27

Chain AL34

60S ribosomal protein L34