J4_7TOR_002
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7TOR|1|A18S|A|672, 7TOR|1|A18S|A|1083, 7TOR|1|A18S|C|1085, 7TOR|1|A18S|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7TOR_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0878
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7TOR|1|A18S|A|671
7TOR|1|A18S|A|672
7TOR|1|A18S|G|673
*
7TOR|1|A18S|C|1032
7TOR|1|A18S|G|1033
7TOR|1|A18S|A|1034
7TOR|1|A18S|A|1035
7TOR|1|A18S|A|1036
7TOR|1|A18S|G|1037
*
7TOR|1|A18S|C|1078
7TOR|1|A18S|C|1079
7TOR|1|A18S|A|1080
7TOR|1|A18S|U|1081
7TOR|1|A18S|A|1082
7TOR|1|A18S|A|1083
7TOR|1|A18S|A|1084
7TOR|1|A18S|C|1085
7TOR|1|A18S|G|1086
7TOR|1|A18S|A|1087
7TOR|1|A18S|U|1088
7TOR|1|A18S|G|1089
*
7TOR|1|A18S|U|1160
7TOR|1|A18S|U|1161
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL41
- eL41
- Chain AL43
- 60S ribosomal protein L37a
- Chain AS11
- 40S ribosomal protein S11
- Chain AS13
- 40S ribosomal protein S13
- Chain AS14
- uS11
- Chain AS22
- 40S ribosomal protein S15a
- Chain AS23
- 40S ribosomal protein S23
- Chain AS26
- eS26
Coloring options: