J4_7TOR_005

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7TOR|1|A28S|A|2366, 7TOR|1|A28S|U|2369, 7TOR|1|A28S|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|C|2365
7TOR|1|A28S|A|2366
7TOR|1|A28S|A|2367
7TOR|1|A28S|A|2368
7TOR|1|A28S|U|2369
7TOR|1|A28S|A|2370
7TOR|1|A28S|U|2371
*
7TOR|1|A28S|A|2389
7TOR|1|A28S|G|2390
7TOR|1|A28S|G|2391
*
7TOR|1|A28S|C|2824
7TOR|1|A28S|A|2825
7TOR|1|A28S|U|2826
7TOR|1|A28S|G|2827
7TOR|1|A28S|U|2828
7TOR|1|A28S|U|2829
*
7TOR|1|A28S|A|3856
7TOR|1|A28S|G|3857

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17

Chain AL19

60S ribosomal protein L19

Chain AL31

60S ribosomal protein L31