J4_7TOS_007

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7TOS|1|23S|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOS_007 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0911

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7TOS|1|23S|G|1310
7TOS|1|23S|G|1311
7TOS|1|23S|U|1312
7TOS|1|23S|U|1313
7TOS|1|23S|C|1314
*
7TOS|1|23S|G|1338
7TOS|1|23S|G|1339
7TOS|1|23S|U|1340
7TOS|1|23S|G|1341
7TOS|1|23S|A|1342
7TOS|1|23S|G|1343
*
7TOS|1|23S|C|1404
7TOS|1|23S|U|1405
*
7TOS|1|23S|A|1597
7TOS|1|23S|A|1598
7TOS|1|23S|U|1599
7TOS|1|23S|C|1600
7TOS|1|23S|G|1601
7TOS|1|23S|U|1602
7TOS|1|23S|A|1603
7TOS|1|23S|C|1604

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L23

50S ribosomal protein L23

Chain L34

50S ribosomal protein L34