J4_7TOS_011

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7TOS|1|23S|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOS_011 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.114

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7TOS|1|23S|C|1833
7TOS|1|23S|U|1834
7TOS|1|23S|G|1835
*
7TOS|1|23S|C|1905
7TOS|1|23S|G|1906
*
7TOS|1|23S|C|1924
7TOS|1|23S|C|1925
7TOS|1|23S|U|1926
7TOS|1|23S|A|1927
7TOS|1|23S|A|1928
7TOS|1|23S|G|1929
7TOS|1|23S|G|1930
7TOS|1|23S|U|1931
7TOS|1|23S|A|1932
7TOS|1|23S|G|1933
*
7TOS|1|23S|C|1967
7TOS|1|23S|G|1968
7TOS|1|23S|A|1969
7TOS|1|23S|A|1970
7TOS|1|23S|U|1971
7TOS|1|23S|G|1972

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA

Chain L02

50S ribosomal protein L2