J4_7TTU_005

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TTU_005 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.0981

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7TTU|1|1|G|1799
7TTU|1|1|A|1800
7TTU|1|1|C|1801
7TTU|1|1|U|1802
7TTU|1|1|G|1803
*
7TTU|1|1|C|1815
7TTU|1|1|A|1816
7TTU|1|1|C|1817
7TTU|1|1|A|1818
7TTU|1|1|G|1819
*
7TTU|1|1|U|1854
7TTU|1|1|G|1855
7TTU|1|1|A|1856
7TTU|1|1|C|1857
*
7TTU|1|1|G|2002
7TTU|1|1|U|2003
7TTU|1|1|A|2004
7TTU|1|1|A|2005
7TTU|1|1|C|2006

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2