J4_7TUT_004

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7TUT|1|K|A|2366, 7TUT|1|K|U|2369, 7TUT|1|K|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TUT|1|K|C|2365
7TUT|1|K|A|2366
7TUT|1|K|A|2367
7TUT|1|K|A|2368
7TUT|1|K|U|2369
7TUT|1|K|A|2370
7TUT|1|K|U|2371
*
7TUT|1|K|A|2389
7TUT|1|K|G|2390
7TUT|1|K|G|2391
*
7TUT|1|K|C|2824
7TUT|1|K|A|2825
7TUT|1|K|U|2826
7TUT|1|K|G|2827
7TUT|1|K|U|2828
7TUT|1|K|U|2829
*
7TUT|1|K|A|3856
7TUT|1|K|G|3857

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

Ribosomal protein L19

Chain d

eL31