J4_7TUT_007

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TUT_007 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0915

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

7TUT|1|K|G|3634
7TUT|1|K|A|3635
7TUT|1|K|C|3636
7TUT|1|K|U|3637
7TUT|1|K|G|3638
*
7TUT|1|K|C|3650
7TUT|1|K|A|3651
7TUT|1|K|A|3652
7TUT|1|K|A|3653
7TUT|1|K|G|3654
*
7TUT|1|K|U|3690
7TUT|1|K|G|3691
7TUT|1|K|A|3692
7TUT|1|K|U|3693
7TUT|1|K|U|3694
*
7TUT|1|K|A|3821
7TUT|1|K|U|3822
7TUT|1|K|G|3823
7TUT|1|K|A|3824
7TUT|1|K|A|3825
7TUT|1|K|C|3826

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain n

eL41

Chain p

eL43