J4_7U2I_017

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7U2I|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7U2I_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.11

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7U2I|1|2A|C|268
7U2I|1|2A|U|269
*
7U2I|1|2A|G|370
7U2I|1|2A|A|371
7U2I|1|2A|G|372
7U2I|1|2A|U|373
7U2I|1|2A|A|374
7U2I|1|2A|C|375
*
7U2I|1|2A|G|399
7U2I|1|2A|G|400
7U2I|1|2A|A|401
7U2I|1|2A|A|402
7U2I|1|2A|U|403
7U2I|1|2A|C|404
7U2I|1|2A|U|405
7U2I|1|2A|G|406
*
7U2I|1|2A|U|421
7U2I|1|2A|A|422
7U2I|1|2A|A|423
7U2I|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9